Myriads full output


Input file was: aaAVC_neu.dat


NOTATION FOR THE METHODS:

B: Bonferroni method (Dunn 1961).
BH: The Benjamini & Hochberg method (Benjamini & Hochberg 1995).
BKY: The two-stage linear step-up procedure (TST in Benjamini et al 2006).
BonSEV: BonferroniSEV (modified from Li et al. 2017 to incorporate SLIM PI0 estimation).
BY: The Benjamini & Yekutieli method (Benjamini & Yekutieli 2001).
Hommel: Hommel's procedure in linear time (Hommel 1988; Meijer et al 2019).
SB: The sequential Bonferroni method (Holm 1979).
SGoF: The SGoF method (BMC Bioinformatics: Carvajal-Rodriguez et al 2009).
SLIM: Sliding Linear Model (Wang et al 2011).

Total number of tests = 5979.
Number of tests below user defined nominal Type I error rate 0.05 = 187.
Gamma for expectations under SGoF metatest = 0.05.
Values in red mean that the corresponding adjusted p-value (or q-value) is lower than the user-defined error rate.
π0 estimation method was the mode of all methods.

TEST-IDP-valueBBHBKYBonSEVBYHommelSBSGoF(0.05)SLIM q-value (π0 = 1)
12272_370.03030310.488920.51336611110.14285711
15401_160.03030310.488920.51336611110.14285711
16498_210.03030310.488920.51336611110.14285711
9045_350.03030310.488920.51336611110.14285711
12916_100.03030310.488920.51336611110.14285711
13982_120.03030310.488920.51336611110.14285711
2397_100.03030310.488920.51336611110.14285711
11138_160.03030310.488920.51336611110.14285711
1824_160.03030310.488920.51336611110.14285711
8430_280.03030310.488920.51336611110.14285711
10193_70.03030310.488920.51336611110.14285711
13635_190.03030310.488920.51336611110.14285711
14005_110.03030310.488920.51336611110.14285711
15674_160.03030310.488920.51336611110.14285711
499_330.03030310.488920.51336611110.14285711
13053_70.03030310.488920.51336611110.14285711
9475_770.03030310.488920.51336611110.14285711
8798_160.03030310.488920.51336611110.14285711
1798_360.03030310.488920.51336611110.14285711
13827_60.03030310.488920.51336611110.14285711
4138_100.03030310.488920.51336611110.14285711
13541_170.03030310.488920.51336611110.14285711
14003_100.03030310.488920.51336611110.14285711
14109_60.03030310.488920.51336611110.14285711
11287_70.03030310.488920.51336611110.14285711
2680_320.03030310.488920.51336611110.14285711
2166_190.03030310.488920.51336611110.14285711
2423_260.03030310.488920.51336611110.14285711
1954_120.03030310.488920.51336611110.14285711
15790_70.03030310.488920.51336611110.14285711
15930_130.03030310.488920.51336611110.14285711
12567_70.03030310.488920.51336611110.14285711
8433_240.03030310.488920.51336611110.14285711
12762_150.03030310.488920.51336611110.14285711
13417_100.03030310.488920.51336611110.14285711
10776_70.03030310.488920.51336611110.14285711
4399_130.03030310.488920.51336611110.14285711
12087_400.03030310.488920.51336611110.14285711
3731_280.03030310.488920.51336611110.14285711
6935_400.03030310.488920.51336611110.14285711
14355_950.03030310.488920.51336611110.14285711
14569_100.03030310.488920.51336611110.14285711
6090_710.03030310.488920.51336611110.14285711
1826_550.03030310.488920.51336611110.14285711
7361_80.03030310.488920.51336611110.14285711
9673_290.03030310.488920.51336611110.14285711
11862_80.03030310.488920.51336611110.14285711
12214_60.03030310.488920.51336611110.14285711
16499_200.03030310.488920.51336611110.14285711
3248_140.03030310.488920.51336611110.14285711
3486_150.03030310.488920.51336611110.14285711
13479_840.03030310.488920.51336611110.14285711
14769_110.03030310.488920.51336611110.14285711
8065_390.03030310.488920.51336611110.14285711
11566_70.03030310.488920.51336611110.14285711
10933_200.03030310.488920.51336611110.14285711
399_160.03030310.488920.51336611110.14285711
12574_80.03030310.488920.51336611110.14285711
13004_80.03030310.488920.51336611110.14285711
3153_80.03030310.488920.51336611110.14285711
3172_170.03030310.488920.51336611110.14285711
12500_600.03030310.488920.51336611110.14285711
16425_140.03030310.488920.51336611110.14285711
1856_520.03030310.488920.51336611110.14285711
3433_660.03030310.488920.51336611110.14285711
5707_160.03030310.488920.51336611110.14285711
709_460.03030310.488920.51336611110.14285711
15497_100.03030310.488920.51336611110.14285711
13497_70.03030310.488920.51336611110.14285711
16335_150.03030310.488920.51336611110.14285711
1089_110.03030310.488920.51336611110.14285711
12490_180.03030310.488920.51336611110.14285711
9822_180.03030310.488920.51336611110.14285711
2732_1030.03030310.488920.51336611110.14285711
1785_90.03030310.488920.51336611110.14285711
2267_90.03030310.488920.51336611110.14285711
14772_470.03030310.488920.51336611110.14285711
16010_230.03030310.488920.51336611110.14285711
10104_200.03030310.488920.51336611110.14285711
1004_170.03030310.488920.51336611110.14285711
328_140.03030310.488920.51336611110.14285711
5392_660.03030310.488920.51336611110.14285711
3635_140.03030310.488920.51336611110.14285711
9967_240.03030310.488920.51336611110.14285711
2890_560.03030310.488920.51336611110.14285711
7855_170.03030310.488920.51336611110.14285711
8840_70.03030310.488920.51336611110.14285711
5292_110.03030310.488920.51336611110.14285711
13003_90.03030310.488920.51336611110.14285711
5191_350.03030310.488920.51336611110.14285711
12714_210.03030310.488920.51336611110.14285711
13998_410.03030310.488920.51336611110.14285711
2778_80.03030310.488920.51336611110.14285711
4949_230.03030310.488920.51336611110.14285711
11750_170.03030310.488920.51336611110.14285711
6234_130.03030310.488920.51336611110.14285711
3933_840.03030310.488920.51336611110.14285711
2786_110.03030310.488920.51336611110.14285711
13995_120.03030310.488920.51336611110.14285711
5178_160.03030310.488920.51336611110.14285711
10395_120.03030310.488920.51336611110.14285711
10160_90.03030310.488920.51336611110.14285711
15216_370.03030310.488920.51336611110.14285711
2050_170.03030310.488920.51336611110.14285711
6013_130.03030310.488920.51336611110.14285711
1707_150.03030310.488920.51336611110.14285711
3989_370.03030310.488920.51336611110.14285711
2029_120.03030310.488920.51336611110.14285711
4607_210.03030310.488920.51336611110.14285711
8059_80.03030310.488920.51336611110.14285711
5437_340.03030310.488920.51336611110.14285711
11008_300.03030310.488920.51336611110.14285711
6656_90.04761910.488920.51336611110.14285711
14546_110.04761910.488920.51336611110.14285711
22512_730.04761910.488920.51336611110.14285711
5727_90.04761910.488920.51336611110.14285711
11878_650.04761910.488920.51336611110.14285711
5573_240.04761910.488920.51336611110.14285711
4058_100.04761910.488920.51336611110.14285711
7451_360.04761910.488920.51336611110.14285711
14340_230.04761910.488920.51336611110.14285711
2352_110.04761910.488920.51336611110.14285711
12664_340.04761910.488920.51336611110.14285711
6378_100.04761910.488920.51336611110.14285711
11676_60.04761910.488920.51336611110.14285711
398_130.04761910.488920.51336611110.14285711
5496_410.04761910.488920.51336611110.14285711
8756_120.04761910.488920.51336611110.14285711
15459_110.04761910.488920.51336611110.14285711
6566_220.04761910.488920.51336611110.14285711
7419_320.04761910.488920.51336611110.14285711
22498_160.04761910.488920.51336611110.14285711
509_190.04761910.488920.51336611110.14285711
2502_70.04761910.488920.51336611110.14285711
3493_140.04761910.488920.51336611110.14285711
128_80.04761910.488920.51336611110.14285711
11388_160.04761910.488920.51336611110.14285711
7971_200.04761910.488920.51336611110.14285711
778_180.04761910.488920.51336611110.14285711
10108_280.04761910.488920.51336611110.14285711
1527_290.04761910.488920.51336611110.14285711
4938_210.04761910.488920.51336611110.14285711
15523_130.04761910.488920.51336611110.14285711
3553_200.04761910.488920.51336611110.14285711
15062_60.04761910.488920.51336611110.14285711
11373_170.04761910.488920.51336611110.14285711
6976_130.04761910.488920.51336611110.14285711
9670_160.04761910.488920.51336611110.14285711
10883_110.04761910.488920.51336611110.14285711
13199_240.04761910.488920.51336611110.14285711
4397_220.04761910.488920.51336611110.14285711
9905_90.04761910.488920.51336611110.14285711
14347_60.04761910.488920.51336611110.14285711
3053_90.04761910.488920.51336611110.14285711
2022_160.04761910.488920.51336611110.14285711
8891_70.04761910.488920.51336611110.14285711
8732_250.04761910.488920.51336611110.14285711
5579_200.04761910.488920.51336611110.14285711
2797_150.04761910.488920.51336611110.14285711
16530_100.04761910.488920.51336611110.14285711
9634_80.04761910.488920.51336611110.14285711
9830_70.04761910.488920.51336611110.14285711
7033_110.04761910.488920.51336611110.14285711
10757_430.04761910.488920.51336611110.14285711
14321_240.04761910.488920.51336611110.14285711
9849_180.04761910.488920.51336611110.14285711
9530_70.04761910.488920.51336611110.14285711
5256_830.04761910.488920.51336611110.14285711
5076_70.04761910.488920.51336611110.14285711
5328_170.04761910.488920.51336611110.14285711
1362_80.04761910.488920.51336611110.14285711
12828_110.04761910.488920.51336611110.14285711
10143_190.04761910.488920.51336611110.14285711
1253_210.04761910.488920.51336611110.14285711
12132_150.04761910.488920.51336611110.14285711
5911_60.04761910.488920.51336611110.14285711
10679_80.04761910.488920.51336611110.14285711
3694_80.04761910.488920.51336611110.14285711
19539_280.04761910.488920.51336611110.14285711
1668_840.04761910.488920.51336611110.14285711
4340_90.04761910.488920.51336611110.14285711
24680_170.04761910.488920.51336611110.14285711
4141_250.04761910.488920.51336611110.14285711
5482_60.04761910.488920.51336611110.14285711
6169_160.04761910.488920.51336611110.14285711
10637_190.04761910.488920.51336611110.14285711
15146_160.04761910.488920.51336611110.14285711

Adjusted p-values for SGoF were computed following Castro-Conde & de Una-Alvarez 2015. Adjusted Bonferroni, BH, BK, BonSEV, BKY and SB p-values were computed following Yekutieli & Benjamini 1999. Adjusted Hommel p-values were computed following Meijer et al 2019. Adjusted BH p-values coincide with q-values under the complete null hypothesis (π0 = 1) and large number of tests. Values under SLIM correspond to the q-value obtained using the SLIM estimate for the proportion of true nulls.

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(C) 2017-2023 by A. Carvajal-Rodriguez
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